IR LED Calibration¶

used to adjust the output of non PAR LEDS

Warning

These calibration steps require a CaliQ

2229

Basic Usage¶

Example: Import statement for the ir_led_calibration protocol¶

## Import ir_led_calibration
from jii_multispeq_protocols.protocols.calibrations import ir_led_calibration as _ir_led_calibration

Sequence¶

        %%{
init: {
  "theme": "base",
  "themeVariables": {"primaryColor": "#49e06d", "primaryTextColor": "#005e5e", "primaryBorderColor": "#005e5e", "lineColor": "#fff381", "secondaryColor": "#afd7f4", "tertiaryColor": "#D7EBF9"}
}
}%%
flowchart TD
     START((Start))
     A0["`**Protocol**
Runs only during *first* repeat`"]:::protocol
     START ==> A0
     A1["`**@s0**
*Detector:*
*Pulsed LED:*
*Non Pulsed LED:* 530nm (Main)`"]:::protocol
     A0 ==> A1
     A1 ==> END
     A1 -.-> |5x| A0
     linkStyle 3 stroke-width:3px
     END((&nbsp;End&nbsp;))
     classDef protocol text-align:left,white-space:pre;

Details¶

Code¶

Protocol Code¶

[  {  '_protocol_set_': [  {  'alert': 'Stack panels #1 and #9 and place in '
                                       'clamp',
                              'bleed_correction': 0,
                              'do_once': 1},
                           {  'detectors': [['@s1']],
                              'label': '@s0',
                              'nonpulsed_lights': [[1]],
                              'nonpulsed_lights_brightness': [[-1]],
                              'protocol_repeats': '#l2',
                              'pulse_distance': [5000],
                              'pulse_length': [['@s4']],
                              'pulsed_lights': [['@s0']],
                              'pulsed_lights_brightness': [['@p2']],
                              'pulses': [1]}],
      'set_repeats': '#l0',
      'v_arrays': [  [6, 8, 9, 10, 5],
                     [1, 1, 1, 1, 1],
                     [  -20,
                        -50,
                        -100,
                        -200,
                        -400,
                        -600,
                        -1000,
                        -1500,
                        -2000,
                        -4000],
                     [2250, 2250, 2250, 2250, 2250],
                     [7, 7, 7, 7, 2]]}]

Analysis¶

Usage¶

Analysis Example (requires JII-MultispeQ package)¶

from jii_multispeq import measurement as _measurement
from jii_multispeq_protocols.protocols.calibrations import ir_led_calibration as _ir_led_calibration

## Take a measurement using the MultispeQ
data, crc32 = _measurement.measure(port="<Selected Port>", protocol=_ir_led_calibration, filename=None, notes="")

## The analyze function of JII-MultispeQ helps to provide the correct format
output = _measurement.analyze( data, _ir_led_calibration._analyze )

## View Analysis output (as table)
_measurement.view( output )

Function Details¶

_analyze(_data)[source]

Macro for data evaluation on PhotosynQ.org
by: David M. Kramer
created: January 4, 2019 9:02 PM
updated: 7/12/24 adjusted saturation error threshhold to 60K from 50K

Example Data¶

Parameter	Value
device_battery	99
device_firmware	2.311
device_id	52:00:12:b7
device_name	MultispeQ
device_version	2
LEDs	[6, 8, 9, 10, 5]
par10	[0, 0, 0, 1, 702, 1833, 4259, 7386, 10551, 24179]
par5	[0, 0, 406, 3172, 9436, 16037, 29249, 46031, 62851, 62673]
par6	[0, 0, 2, 174, 603, 1030, 1858, 2890, 3895, 7786]
par8	[2451, 2452, 2452, 2649, 3241, 3823, 4980, 6392, 7792, 13240]
par9	[0, 0, 0, 59, 311, 574, 1073, 1695, 2312, 4729]
settings	[-20, -50, -100, -200, -400, -600, -1000, -1500, -2000, -4000]
time	1591560748952
toDevice	par_to_dac_lin+6+150.0+417.0+683.0+1217.0+2283.0+4095+4095+par_to_dac_lin+8+150.0+417.0+683.0+1217.0+2283.0+4095+4095+par_to_dac_lin+9+150.0+417.0+683.0+1217.0+2283.0+4095+4095+par_to_dac_lin+10+150.0+283.0+417.0+683.0+1217.0+2817.0+4095+par_to_dac_lin+5+150.0+190.0+230.0+310.0+470.0+950.0+1750.0+par_max_setting+5+4095+par_max_setting+6+4095+par_max_setting+8+4095+par_max_setting+9+4095+par_max_setting+10+4095+setCalTime+3+hello+