Photosynthesis (RIDES)¶
Measures the same photosynthesis-related parameters in <15 seconds as ‘Leaf Photosynthesis MutlispeQ v2.0’ plus additional PS1 and P700 measurements.
Chlorophll Fluorescence: Phi2, PhiNPQ, PhiNO, NPQt, qL, LEF
Relative Chlorophyll
ATP synthase conductivity, proton motive force parameters through DIRK(ECS): ECSt mAU, vH+, gH+
Saturation pulse estimation of PSI parameters: PS1 active centers, PS1 open, PS1 oxidized and PS1 over reduced
Absorbance at: 450, 535, 605, 650, 730, 850, 880, and 940nm.
The rate of turnover of the cytochrome b6f complex through DIRKP(700)
Leaf Thickness (in mm), angle, and cardinal direction
Leaf Temperature and differential from ambient temperature
Environmental conditions: PAR and ambient temperature/pressure/humidity
Important
Supports MultispeQ V1 and V2 with Firmware 2.34 and higher
Import
Example: Import
rides into a script¶import jii_multispeq_protocols.rides as _rides
Protocol
[{'_protocol_set_': [{'averages': 1,
'energy_min_wake_time': 7000,
'energy_save_timeout': 300000,
'environmental': [['light_intensity'],
['temperature_humidity_pressure'],
['temperature_humidity_pressure2'],
['contactless_temp'],
['compass_and_angle']],
'label': 'no_leaf_baseline',
'par_led_start_on_open': 2},
{'autogain': [[2, 1, 3, 12, 50000], [3, 8, 1, 80, 50000]],
'averages': 1,
'detectors': [[3],
[3],
[3],
[3],
[3],
[3],
[3],
[3],
[3],
[3],
[3],
[3],
[3],
[3],
[3],
[3],
[3],
[3],
[3],
[1],
[1],
[1]],
'environmental': [['light_intensity'],
['temperature_humidity_pressure'],
['temperature_humidity_pressure2'],
['contactless_temp'],
['thickness']],
'label': 'DIRK_ECS',
'nonpulsed_lights': [[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2]],
'nonpulsed_lights_brightness': [['light_intensity'],
['light_intensity'],
[0],
['light_intensity'],
['light_intensity'],
[0],
['light_intensity'],
['light_intensity'],
[0],
['light_intensity'],
['light_intensity'],
[0],
['light_intensity'],
['light_intensity'],
[0],
['light_intensity'],
['light_intensity'],
[0],
['light_intensity'],
['light_intensity'],
[0],
['light_intensity']],
'par_led_start_on_close': 2,
'protocols_delay': 10,
'pulse_distance': [1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500],
'pulse_length': [['a_d2'],
['a_d2'],
['a_d2'],
['a_d2'],
['a_d2'],
['a_d2'],
['a_d2'],
['a_d2'],
['a_d2'],
['a_d2'],
['a_d2'],
['a_d2'],
['a_d2'],
['a_d2'],
['a_d2'],
['a_d2'],
['a_d2'],
['a_d2'],
['a_d2'],
['a_d2'],
['a_d2'],
['a_d2']],
'pulsed_lights': [[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[3],
[3],
[3]],
'pulsed_lights_brightness': [['a_b2'],
['a_b2'],
['a_b2'],
['a_b2'],
['a_b2'],
['a_b2'],
['a_b2'],
['a_b2'],
['a_b2'],
['a_b2'],
['a_b2'],
['a_b2'],
['a_b2'],
['a_b2'],
['a_b2'],
['a_b2'],
['a_b2'],
['a_b2'],
['a_b2'],
['a_b2'],
['a_b2'],
['a_b2']],
'pulses': [100,
100,
20,
100,
100,
20,
100,
100,
20,
100,
100,
20,
100,
100,
20,
100,
100,
20,
100,
20,
20,
100]},
{'averages': 1,
'detectors': [[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1],
[1]],
'environmental': [['previous_light_intensity'],
['temperature_humidity_pressure'],
['temperature_humidity_pressure2'],
['contactless_temp'],
['compass_and_angle']],
'label': 'DIRK_P700',
'nonpulsed_lights': [[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2],
[2]],
'nonpulsed_lights_brightness': [['light_intensity'],
['light_intensity'],
[0],
['light_intensity'],
['light_intensity'],
[0],
['light_intensity'],
['light_intensity'],
[0],
['light_intensity'],
['light_intensity'],
[0],
['light_intensity'],
['light_intensity'],
[0],
['light_intensity'],
['light_intensity'],
[0],
['light_intensity'],
['light_intensity'],
[0],
['light_intensity']],
'protocols_delay': 1,
'pulse_distance': [1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500,
1500],
'pulse_length': [['a_d3'],
['a_d3'],
['a_d3'],
['a_d3'],
['a_d3'],
['a_d3'],
['a_d3'],
['a_d3'],
['a_d3'],
['a_d3'],
['a_d3'],
['a_d3'],
['a_d3'],
['a_d3'],
['a_d3'],
['a_d3'],
['a_d3'],
['a_d3'],
['a_d3'],
['a_d3'],
['a_d3'],
['a_d3']],
'pulsed_lights': [[8],
[8],
[8],
[8],
[8],
[8],
[8],
[8],
[8],
[8],
[8],
[8],
[8],
[8],
[8],
[8],
[8],
[8],
[8],
[8],
[8],
[8]],
'pulsed_lights_brightness': [['a_b3'],
['a_b3'],
['a_b3'],
['a_b3'],
['a_b3'],
['a_b3'],
['a_b3'],
['a_b3'],
['a_b3'],
['a_b3'],
['a_b3'],
['a_b3'],
['a_b3'],
['a_b3'],
['a_b3'],
['a_b3'],
['a_b3'],
['a_b3'],
['a_b3'],
['a_b3'],
['a_b3'],
['a_b3']],
'pulses': [100,
100,
20,
100,
100,
20,
100,
100,
20,
100,
100,
20,
100,
100,
20,
100,
100,
20,
100,
100,
20,
100]},
{'averages': 1,
'detectors': [[1, 1],
[1, 1],
[1, 1],
[1, 1],
[1, 1],
[1, 1],
[1, 1],
[0],
[1, 1],
[1, 1],
[1, 1],
[1, 1],
[1, 1],
[1, 1]],
'environmental': [['previous_light_intensity'],
['temperature_humidity_pressure'],
['temperature_humidity_pressure2'],
['contactless_temp'],
['thickness'],
['compass_and_angle']],
'label': 'PAM',
'nonpulsed_lights': [[2],
[2],
[2],
[2],
[2],
[2],
[2],
[9],
[0],
[2],
[2],
[2],
[2],
[2]],
'nonpulsed_lights_brightness': [['light_intensity'],
[8000],
[7000],
[6000],
[5000],
[4000],
[0],
[2090],
[0],
[8000],
[6000],
[4000],
[3000],
['light_intensity']],
'pulse_distance': [5000,
5000,
5000,
5000,
5000,
5000,
5000,
5000,
5000,
5000,
5000,
5000,
5000],
'pulse_length': [[30, 'a_d3'],
[30, 'a_d3'],
[30, 'a_d3'],
[30, 'a_d3'],
[30, 'a_d3'],
[30, 'a_d3'],
[30, 'a_d3'],
[0],
[30, 'a_d3'],
[30, 'a_d3'],
[30, 'a_d3'],
[30, 'a_d3'],
[30, 'a_d3'],
[30, 'a_d3']],
'pulsed_lights': [[3, 8],
[3, 8],
[3, 8],
[3, 8],
[3, 8],
[3, 8],
[3, 8],
[0],
[3, 8],
[3, 8],
[3, 8],
[3, 8],
[3, 8],
[3, 8]],
'pulsed_lights_brightness': [[400, 'auto_bright3'],
[400, 'auto_bright3'],
[400, 'auto_bright3'],
[400, 'auto_bright3'],
[400, 'auto_bright3'],
[400, 'auto_bright3'],
[400, 'auto_bright3'],
[0],
[400, 'auto_bright3'],
[400, 'auto_bright3'],
[400, 'auto_bright3'],
[400, 'auto_bright3'],
[400, 'auto_bright3'],
[400, 'auto_bright3']],
'pulses': [100,
30,
15,
15,
15,
15,
15,
600,
15,
30,
15,
15,
15,
15]},
{'averages': 1,
'environmental': [['light_intensity'],
['temperature_humidity_pressure'],
['temperature_humidity_pressure2'],
['contactless_temp'],
['thickness'],
['compass_and_angle']],
'label': 'SPAD',
'spad': [1]}]}]
Analysis Function
- _analyze(_data)[source]
Data evaluation of RIDES
by: David M. Kramer created: 2017-05-09 @ 18:15:27
Analysis Example (requires
JII-MultispeQ package)¶from jii_multispeq import measurement
## Take a measurement using the MultispeQ
data, crc32 = jii_multispeq.measure(port="<Selected Port>", protocol=_rides, filename=None, notes="")
## The analyze function of JII-MultispeQ helps to provide the correct format
output = measurement.analyze( data, _rides._analzye )
## View Analysis output (as table)
measurement.view( output )