Relative Chlorophyll Content (SPAD)
===================================

.. automodule:: jii_multispeq_protocols.protocols.spad
  :members:
  :undoc-members:
  :show-inheritance:
  :no-index:
  :no-title:

Basic Usage
-----------

.. code-block:: python
  :caption: *Example:* Import statement for the **spad** protocol

  ## Import spad
  from jii_multispeq_protocols.protocols import spad as _spad

----

Sequence
--------

.. mermaid::

   %%{
   init: {
     "theme": "base",
     "themeVariables": {"primaryColor": "#49e06d", "primaryTextColor": "#005e5e", "primaryBorderColor": "#005e5e", "lineColor": "#fff381", "secondaryColor": "#afd7f4", "tertiaryColor": "#D7EBF9"}
   }
   }%%
   flowchart LR
   	START((Start))
   	A0["`**spad**`"]:::protocol
   	START ==> A0
   	A0 ==> END
   	END(( End ))
   	classDef protocol text-align:left,white-space:pre;


----

Details
-------



Code
~~~~

.. code-block:: python
   :caption: Protocol Code
   
   [  {  '_protocol_set_': [  {  'label': 'spad',
                                 'protocol_repeats': 1,
                                 'spad': [[2, 3, 6], [-1]]}]}]


.. warning:: Protocol failed automated validation!

  + Path '0 -> _protocol_set_ -> 0 -> spad': [[2, 3, 6], [-1]] is not valid under any of the given schemas



----

Analysis
--------


Usage
~~~~~

.. code-block:: python
  :caption: Analysis Example (requires ``JII-MultispeQ`` package)

  from jii_multispeq import measurement as _measurement
  from jii_multispeq_protocols.protocols import spad as _spad

  ## Take a measurement using the MultispeQ
  data, crc32 = _measurement.measure(port="<Selected Port>", protocol=_spad, filename=None, notes="")

  ## The analyze function of JII-MultispeQ helps to provide the correct format
  output = _measurement.analyze( data, _spad._analyze )

  ## View Analysis output (as table)
  _measurement.view( output )

Function Details
~~~~~~~~~~~~~~~~

.. autofunction:: jii_multispeq_protocols.protocols.spad._analyze
  :no-index:


.. note:: No MultispeQ output example found, missing ``_example``, check manually.